SNP Detail For rs886774
1.Mapping Information
Human SNP ID rs886774
Human chromosome chr7
Human SNP position 107854989
Pig chromosome chr9
Pig SNP position 118351994
2.Annotation Information
PubMed ID19915572
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19915572
StudyGenome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.
Disease/TraitUlcerative colitis
Initial sample2,361 European ancestry cases, 5,417 European ancestry controls
Replication sample2,321 European ancestry cases, 4,818 European ancestry controls
Region7q31.1
Chromosome idchr7
Chromosome position107854989
Reported geneLAMB1
Mapped geneSLC26A3 - LOC105375444
Upstream gene id1811
Downstream gene id105375444
SNP gene ids
Upstream gene distance51756
Downstream gene distance1490
SNP risk allelers886774-G
SNPsrs886774
Merged0
SNP id current886774
Contextintergenic_variant
Intergenic1
Allele frequency0.41
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.11
%95 Ci[1.03-1.19]
PlatformAffymetrix [NR]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000527