Human SNP ID | rs886774 |
---|---|
Human chromosome | chr7 |
Human SNP position | 107854989 |
Pig chromosome | chr9 |
Pig SNP position | 118351994 |
PubMed ID | 19915572 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19915572 |
Study | Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region. |
Disease/Trait | Ulcerative colitis |
Initial sample | 2,361 European ancestry cases, 5,417 European ancestry controls |
Replication sample | 2,321 European ancestry cases, 4,818 European ancestry controls |
Region | 7q31.1 |
Chromosome id | chr7 |
Chromosome position | 107854989 |
Reported gene | LAMB1 |
Mapped gene | SLC26A3 - LOC105375444 |
Upstream gene id | 1811 |
Downstream gene id | 105375444 |
SNP gene ids | |
Upstream gene distance | 51756 |
Downstream gene distance | 1490 |
SNP risk allele | rs886774-G |
SNPs | rs886774 |
Merged | 0 |
SNP id current | 886774 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.41 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.03-1.19] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000527 |