SNP Detail For rs886090
1.Mapping Information
Human SNP ID rs886090
Human chromosome chr9
Human SNP position 133332667
Pig chromosome chr6
Pig SNP position 125237863
2.Annotation Information
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region9q34.2 x 9q34.2
Chromosome idchr9 x 9
Chromosome position133332667 x 133320327
Reported geneNR x NR
Mapped geneSURF6 x ABO - SURF6
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers886090-A x rs493014-G
SNPsrs886090 x rs493014
Merged0
SNP id current
Contextmissense_variant x downstream_gene_variant
Intergenic
Allele frequency
P value0.00000000006
Pvalue mlog10.2218487496163
P value text
Or beta1.64
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913