SNP Detail For rs883079
1.Mapping Information
Human SNP ID rs883079
Human chromosome chr12
Human SNP position 114355435
Pig chromosome chr14
Pig SNP position 40259397
2.Annotation Information
PubMed ID21076409
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21076409
StudyCommon variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.
Disease/TraitQRS duration
Initial sample39,717 European ancestry individuals, 690 Orcadian individuals
Replication sample7,170 European ancestry individuals
Region12q24.21
Chromosome idchr12
Chromosome position114355435
Reported geneTBX5
Mapped geneTBX5
Upstream gene id
Downstream gene id
SNP gene ids6910
Upstream gene distance
Downstream gene distance
SNP risk allelers883079-C
SNPsrs883079
Merged0
SNP id current883079
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.29
P value0.0000000001
Pvalue mlog10
P value text
Or beta0.49
%95 Ci[0.33-0.65] ms increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitheart function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004311
Study accessionGCST000872