Human SNP ID | rs882632 |
---|---|
Human chromosome | chr2 |
Human SNP position | 29057895 |
Pig chromosome | chr3 |
Pig SNP position | 117053159 |
PubMed ID | 20125088 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20125088 |
Study | Genome-wide association study of recurrent early-onset major depressive disorder. |
Disease/Trait | Major depressive disorder |
Initial sample | 1,020 European ancestry cases, 1,636 European ancestry controls |
Replication sample | NA |
Region | 2p23.2 |
Chromosome id | chr2 |
Chromosome position | 29057895 |
Reported gene | FAM179A, C2orf71 |
Mapped gene | FAM179A - C2orf71 |
Upstream gene id | 165186 |
Downstream gene id | 388939 |
SNP gene ids | |
Upstream gene distance | 5665 |
Downstream gene distance | 3478 |
SNP risk allele | rs882632-T |
SNPs | rs882632 |
Merged | 0 |
SNP id current | 882632 |
Context | 3_prime_UTR_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.34 |
%95 Ci | |
Platform | Affymetrix [671424] |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST000578 |