SNP Detail For rs882632
1.Mapping Information
Human SNP ID rs882632
Human chromosome chr2
Human SNP position 29057895
Pig chromosome chr3
Pig SNP position 117053159
2.Annotation Information
PubMed ID20125088
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20125088
StudyGenome-wide association study of recurrent early-onset major depressive disorder.
Disease/TraitMajor depressive disorder
Initial sample1,020 European ancestry cases, 1,636 European ancestry controls
Replication sampleNA
Region2p23.2
Chromosome idchr2
Chromosome position29057895
Reported geneFAM179A, C2orf71
Mapped geneFAM179A - C2orf71
Upstream gene id165186
Downstream gene id388939
SNP gene ids
Upstream gene distance5665
Downstream gene distance3478
SNP risk allelers882632-T
SNPsrs882632
Merged0
SNP id current882632
Context3_prime_UTR_variant
Intergenic1
Allele frequency0.29
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.34
%95 Ci
PlatformAffymetrix [671424]
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST000578