Human SNP ID | rs882300 |
---|---|
Human chromosome | chr2 |
Human SNP position | 136218685 |
Pig chromosome | chr15 |
Pig SNP position | 18045657 |
PubMed ID | 17903306 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17903306 |
Study | Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study. |
Disease/Trait | Electrocardiographic traits |
Initial sample | 1,951 European ancestry individuals from 355 families |
Replication sample | NA |
Region | 2q22.1 |
Chromosome id | chr2 |
Chromosome position | 136218685 |
Reported gene | intergenic |
Mapped gene | CXCR4 - UBBP1 |
Upstream gene id | 7852 |
Downstream gene id | 7315 |
SNP gene ids | |
Upstream gene distance | 100530 |
Downstream gene distance | 110615 |
SNP risk allele | rs882300-? |
SNPs | rs882300 |
Merged | 0 |
SNP id current | 882300 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (PR interval) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [70897] |
CNV | N |
Mapped trait | electrocardiography, PR interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004327, http://www.ebi.ac.uk/efo/EFO_0004462 |
Study accession | GCST000111 |
PubMed ID | 19525953 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19525953 |
Study | Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. |
Disease/Trait | Multiple sclerosis |
Initial sample | 2,624 European ancestry cases, 7,220 European ancestry controls |
Replication sample | 2,215 European ancestry cases, 2,116 European ancestry controls |
Region | 2q22.1 |
Chromosome id | chr2 |
Chromosome position | 136218685 |
Reported gene | CXCR4 |
Mapped gene | CXCR4 - UBBP1 |
Upstream gene id | 7852 |
Downstream gene id | 7315 |
SNP gene ids | |
Upstream gene distance | 100530 |
Downstream gene distance | 110615 |
SNP risk allele | rs882300-C |
SNPs | rs882300 |
Merged | 0 |
SNP id current | 882300 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.61 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.09-1.30] |
Platform | Affymetrix, Illumina [~ 2560000] (imputed) |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000424 |