SNP Detail For rs879500
1.Mapping Information
Human SNP ID rs879500
Human chromosome chr18
Human SNP position 28544724
Pig chromosome chr6
Pig SNP position 105782467
2.Annotation Information
PubMed ID24023788
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24023788
StudyGene network analysis in a pediatric cohort identifies novel lung function genes.
Disease/TraitLung function (FVC)
Initial sample1,015 European ancestry individuals, 541 African American individuals
Replication sampleNA
Region18q12.1
Chromosome idchr18
Chromosome position28544724
Reported geneCDH2
Mapped geneCDH2 - LOC105372043
Upstream gene id1000
Downstream gene id105372043
SNP gene ids
Upstream gene distance367243
Downstream gene distance174473
SNP risk allelers879500-?
SNPsrs879500
Merged0
SNP id current879500
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [up to 524000]
CNVN
Mapped traitvital capacity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004312
Study accessionGCST002162