SNP Detail For rs87938
1.Mapping Information
Human SNP ID rs87938
Human chromosome chr3
Human SNP position 41096181
Pig chromosome chr13
Pig SNP position 27561850
2.Annotation Information
PubMed ID19801982
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19801982
StudyTwenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.
Disease/TraitBone mineral density (hip)
Initial sample19,195 European ancestry individuals
Replication sampleNA
Region3p22.1
Chromosome idchr3
Chromosome position41096181
Reported geneCTNNB1
Mapped geneLOC105377045 - CTNNB1
Upstream gene id105377045
Downstream gene id1499
SNP gene ids
Upstream gene distance38042
Downstream gene distance103270
SNP risk allelers87938-A
SNPsrs87938
Merged0
SNP id current87938
Contextintergenic_variant
Intergenic1
Allele frequency0.45
P value0.0000000008
Pvalue mlog9.09691001300805
P value text
Or beta0.07
%95 Ci[0.05-0.09] s.d. decrease
PlatformAffymetrix, Illumina [2543686] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST000495