Human SNP ID | rs878962 |
---|---|
Human chromosome | chr12 |
Human SNP position | 3178113 |
Pig chromosome | chr5 |
Pig SNP position | 69315989 |
PubMed ID | 23746317 |
---|---|
Journal | Oral Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/23746317 |
Study | Genome-wide association study of degenerative bony changes of the temporomandibular joint. |
Disease/Trait | Temporomandibular joint disorders |
Initial sample | 146 East Asian ancestry cases, 374 East Asian ancestry controls |
Replication sample | |
Region | 12p13.33 |
Chromosome id | chr12 |
Chromosome position | 3178113 |
Reported gene | TSPAN9 |
Mapped gene | TSPAN9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10867 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs878962-C |
SNPs | rs878962 |
Merged | 0 |
SNP id current | 878962 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 1.89 |
%95 Ci | [1.43-2.50] |
Platform | Illumina [532935] |
CNV | N |
Mapped trait | temporomandibular joint disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005279 |
Study accession | GCST002029 |