SNP Detail For rs877228
1.Mapping Information
Human SNP ID rs877228
Human chromosome chr15
Human SNP position 60784392
Pig chromosome chr1
Pig SNP position 122863180
2.Annotation Information
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region3q21.3 x 15q22.2
Chromosome idchr3 x 15
Chromosome position127755187 x 60784392
Reported geneNR x NR
Mapped geneMGLL x RORA
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers664910-G x rs877228-A
SNPsrs664910 x rs877228
Merged0
SNP id current
Contextintron_variant x intron_variant
Intergenic
Allele frequency
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.5
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913