Human SNP ID | rs875860 |
---|---|
Human chromosome | chr10 |
Human SNP position | 71549772 |
Pig chromosome | chr14 |
Pig SNP position | 80341525 |
PubMed ID | 25493955 |
---|---|
Journal | Kidney Int |
Link | www.ncbi.nlm.nih.gov/pubmed/25493955 |
Study | Genome-wide association study of kidney function decline in individuals of European descent. |
Disease/Trait | Kidney function decline traits |
Initial sample | up to 45,530 European ancestry individuals |
Replication sample | up to 18,028 European ancestry individuals |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 71549772 |
Reported gene | CDH23 |
Mapped gene | CDH23 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64072 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs875860-T |
SNPs | rs875860 |
Merged | 0 |
SNP id current | 875860 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.12 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (eGFRchange CKD) |
Or beta | 0.31 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | chronic kidney disease, GFR change measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003884, http://www.ebi.ac.uk/efo/EFO_0006829 |
Study accession | GCST002720 |