SNP Detail For rs875860
1.Mapping Information
Human SNP ID rs875860
Human chromosome chr10
Human SNP position 71549772
Pig chromosome chr14
Pig SNP position 80341525
2.Annotation Information
PubMed ID25493955
JournalKidney Int
Linkwww.ncbi.nlm.nih.gov/pubmed/25493955
StudyGenome-wide association study of kidney function decline in individuals of European descent.
Disease/TraitKidney function decline traits
Initial sampleup to 45,530 European ancestry individuals
Replication sampleup to 18,028 European ancestry individuals
Region10q22.1
Chromosome idchr10
Chromosome position71549772
Reported geneCDH23
Mapped geneCDH23
Upstream gene id
Downstream gene id
SNP gene ids64072
Upstream gene distance
Downstream gene distance
SNP risk allelers875860-T
SNPsrs875860
Merged0
SNP id current875860
Contextintron_variant
Intergenic0
Allele frequency0.12
P value0.000005
Pvalue mlog5.30102999566398
P value text(eGFRchange CKD)
Or beta0.31
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitchronic kidney disease, GFR change measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003884, http://www.ebi.ac.uk/efo/EFO_0006829
Study accessionGCST002720