SNP Detail For rs8753
1.Mapping Information
Human SNP ID rs8753
Human chromosome chr17
Human SNP position 7514323
Pig chromosome chr12
Pig SNP position 55034435
2.Annotation Information
PubMed ID26424050
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26424050
StudyGenome-wide association study identifies multiple susceptibility loci for glioma.
Disease/TraitNon-glioblastoma glioma
Initial sample2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls
Replication sampleup to 1,490 European ancestry cases, up to 1,723 European ancestry controls
Region17p13.1
Chromosome idchr17
Chromosome position7514323
Reported geneNR
Mapped genePOLR2A
Upstream gene id
Downstream gene id
SNP gene ids5430
Upstream gene distance
Downstream gene distance
SNP risk allelers8753-T
SNPsrs8753
Merged
SNP id current8753
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000000000000000008
Pvalue mlog17.096910013008
P value text
Or beta3.09
%95 Ci[2.39-4.00]
PlatformIllumina [at least 8427548] (imputed)
CNVN
Mapped traitcentral nervous system cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000326
Study accessionGCST003227