Human SNP ID | rs8753 |
---|---|
Human chromosome | chr17 |
Human SNP position | 7514323 |
Pig chromosome | chr12 |
Pig SNP position | 55034435 |
PubMed ID | 26424050 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26424050 |
Study | Genome-wide association study identifies multiple susceptibility loci for glioma. |
Disease/Trait | Non-glioblastoma glioma |
Initial sample | 2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls |
Replication sample | up to 1,490 European ancestry cases, up to 1,723 European ancestry controls |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 7514323 |
Reported gene | NR |
Mapped gene | POLR2A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5430 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8753-T |
SNPs | rs8753 |
Merged | |
SNP id current | 8753 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000000000008 |
Pvalue mlog | 17.096910013008 |
P value text | |
Or beta | 3.09 |
%95 Ci | [2.39-4.00] |
Platform | Illumina [at least 8427548] (imputed) |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST003227 |