SNP Detail For rs875125
1.Mapping Information
Human SNP ID rs875125
Human chromosome chr21
Human SNP position 44709771
Pig chromosome chr13
Pig SNP position 217297058
2.Annotation Information
PubMed ID26077951
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26077951
StudyGenome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.
Disease/TraitCorticobasal degeneration
Initial sample152 cases, 1,986 controls
Replication sampleNA
Region21q22.3
Chromosome idchr21
Chromosome position44709771
Reported geneTSPEAR
Mapped geneTSPEAR
Upstream gene id
Downstream gene id
SNP gene ids54084
Upstream gene distance
Downstream gene distance
SNP risk allelers875125-?
SNPsrs875125
Merged
SNP id current875125
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta2.06
%95 Ci[1.51 - 2.83]
PlatformIllumina [533898] (imputed)
CNVN
Mapped traitCorticobasal degeneration
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_278
Study accessionGCST002970