Human SNP ID | rs861020 |
---|---|
Human chromosome | chr1 |
Human SNP position | 209803766 |
Pig chromosome | chr9 |
Pig SNP position | 146242741 |
PubMed ID | 22863734 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22863734 |
Study | Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci. |
Disease/Trait | Orofacial clefts |
Initial sample | Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls |
Replication sample | up to 795 East Asian ancestry trios |
Region | 1q32.2 |
Chromosome id | chr1 |
Chromosome position | 209803766 |
Reported gene | IRF6 |
Mapped gene | IRF6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3664 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs861020-A |
SNPs | rs861020 |
Merged | 0 |
SNP id current | 861020 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000003 |
Pvalue mlog | 11.5228787452803 |
P value text | (Meta-All, NSCL/P) |
Or beta | 1.443 |
%95 Ci | [1.273-1.635] |
Platform | NR [497084] |
CNV | N |
Mapped trait | progranulin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004625 |
Study accession | GCST001628 |