SNP Detail For rs861020
1.Mapping Information
Human SNP ID rs861020
Human chromosome chr1
Human SNP position 209803766
Pig chromosome chr9
Pig SNP position 146242741
2.Annotation Information
PubMed ID22863734
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22863734
StudyGenome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.
Disease/TraitOrofacial clefts
Initial sampleUp to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls
Replication sampleup to 795 East Asian ancestry trios
Region1q32.2
Chromosome idchr1
Chromosome position209803766
Reported geneIRF6
Mapped geneIRF6
Upstream gene id
Downstream gene id
SNP gene ids3664
Upstream gene distance
Downstream gene distance
SNP risk allelers861020-A
SNPsrs861020
Merged0
SNP id current861020
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000000003
Pvalue mlog11.5228787452803
P value text(Meta-All, NSCL/P)
Or beta1.443
%95 Ci[1.273-1.635]
PlatformNR [497084]
CNVN
Mapped traitprogranulin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004625
Study accessionGCST001628