SNP Detail For rs859980
1.Mapping Information
Human SNP ID rs859980
Human chromosome chr6
Human SNP position 104053323
Pig chromosome chr1
Pig SNP position 79602274
2.Annotation Information
PubMed ID25158072
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25158072
StudyCross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette__s Syndrome and OCD.
Disease/TraitTourette__s syndrome or obsessive-compulsive disorder
Initial sample1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette__s Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French C
Replication sampleNA
Region6q16.3
Chromosome idchr6
Chromosome position104053323
Reported geneLOC100129694
Mapped geneLOC105377916 - LOC105377917
Upstream gene id105377916
Downstream gene id105377917
SNP gene ids
Upstream gene distance512532
Downstream gene distance222164
SNP risk allelers859980-C
SNPsrs859980
Merged0
SNP id current859980
Contextintergenic_variant
Intergenic1
Allele frequency0.53
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.15
%95 Ci[NR]
PlatformIllumina [7659573] (imputed)
CNVN
Mapped traitobsessive-compulsive disorder, Tourette syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004242, http://www.ebi.ac.uk/efo/EFO_0004895
Study accessionGCST002682