Human SNP ID | rs859980 |
---|---|
Human chromosome | chr6 |
Human SNP position | 104053323 |
Pig chromosome | chr1 |
Pig SNP position | 79602274 |
PubMed ID | 25158072 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25158072 |
Study | Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette__s Syndrome and OCD. |
Disease/Trait | Tourette__s syndrome or obsessive-compulsive disorder |
Initial sample | 1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette__s Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French C |
Replication sample | NA |
Region | 6q16.3 |
Chromosome id | chr6 |
Chromosome position | 104053323 |
Reported gene | LOC100129694 |
Mapped gene | LOC105377916 - LOC105377917 |
Upstream gene id | 105377916 |
Downstream gene id | 105377917 |
SNP gene ids | |
Upstream gene distance | 512532 |
Downstream gene distance | 222164 |
SNP risk allele | rs859980-C |
SNPs | rs859980 |
Merged | 0 |
SNP id current | 859980 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.53 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.15 |
%95 Ci | [NR] |
Platform | Illumina [7659573] (imputed) |
CNV | N |
Mapped trait | obsessive-compulsive disorder, Tourette syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004242, http://www.ebi.ac.uk/efo/EFO_0004895 |
Study accession | GCST002682 |