SNP Detail For rs842636
1.Mapping Information
Human SNP ID rs842636
Human chromosome chr2
Human SNP position 60864815
Pig chromosome chr3
Pig SNP position 85026545
2.Annotation Information
PubMed ID20953189
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20953189
StudyGenome-wide association analysis identifies three psoriasis susceptibility loci.
Disease/TraitPsoriasis
Initial sampleUp to 1,831 cases, up to 2,546 controls
Replication sampleUp to 4,064 cases, up to 4,685 controls
Region2p16.1
Chromosome idchr2
Chromosome position60864815
Reported geneNR
Mapped geneLINC01185
Upstream gene id
Downstream gene id
SNP gene ids400957
Upstream gene distance
Downstream gene distance
SNP risk allelers842636-G
SNPsrs842636
Merged0
SNP id current842636
Contextintron_variant
Intergenic0
Allele frequency0.56
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.15
%95 Ci[NR]
PlatformIllumina, Perlegen [up to 7456344] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST000834