Human SNP ID | rs842636 |
---|---|
Human chromosome | chr2 |
Human SNP position | 60864815 |
Pig chromosome | chr3 |
Pig SNP position | 85026545 |
PubMed ID | 20953189 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20953189 |
Study | Genome-wide association analysis identifies three psoriasis susceptibility loci. |
Disease/Trait | Psoriasis |
Initial sample | Up to 1,831 cases, up to 2,546 controls |
Replication sample | Up to 4,064 cases, up to 4,685 controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 60864815 |
Reported gene | NR |
Mapped gene | LINC01185 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 400957 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs842636-G |
SNPs | rs842636 |
Merged | 0 |
SNP id current | 842636 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.56 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.15 |
%95 Ci | [NR] |
Platform | Illumina, Perlegen [up to 7456344] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST000834 |