Human SNP ID | rs842625 |
---|---|
Human chromosome | chr2 |
Human SNP position | 60853347 |
Pig chromosome | chr3 |
Pig SNP position | 85036605 |
PubMed ID | 25903422 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 60853347 |
Reported gene | REL |
Mapped gene | LINC01185 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 400957 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs842625-G |
SNPs | rs842625 |
Merged | 0 |
SNP id current | 842625 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.556 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (EA) |
Or beta | 1.2 |
%95 Ci | [1.13-1.28] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |
PubMed ID | 25903422 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 60853347 |
Reported gene | REL |
Mapped gene | LINC01185 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 400957 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs842625-G |
SNPs | rs842625 |
Merged | 0 |
SNP id current | 842625 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.556 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.11-1.21] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |