SNP Detail For rs842625
1.Mapping Information
Human SNP ID rs842625
Human chromosome chr2
Human SNP position 60853347
Pig chromosome chr3
Pig SNP position 85036605
2.Annotation Information
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region2p16.1
Chromosome idchr2
Chromosome position60853347
Reported geneREL
Mapped geneLINC01185
Upstream gene id
Downstream gene id
SNP gene ids400957
Upstream gene distance
Downstream gene distance
SNP risk allelers842625-G
SNPsrs842625
Merged0
SNP id current842625
Contextintron_variant
Intergenic0
Allele frequency0.556
P value0.00000001
Pvalue mlog8
P value text(EA)
Or beta1.2
%95 Ci[1.13-1.28]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region2p16.1
Chromosome idchr2
Chromosome position60853347
Reported geneREL
Mapped geneLINC01185
Upstream gene id
Downstream gene id
SNP gene ids400957
Upstream gene distance
Downstream gene distance
SNP risk allelers842625-G
SNPsrs842625
Merged0
SNP id current842625
Contextintron_variant
Intergenic0
Allele frequency0.556
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.16
%95 Ci[1.11-1.21]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874