SNP Detail For rs842304
1.Mapping Information
Human SNP ID rs842304
Human chromosome chr9
Human SNP position 7682601
Pig chromosome chr1
Pig SNP position 239786703
2.Annotation Information
PubMed ID21160409
JournalAIDS
Linkwww.ncbi.nlm.nih.gov/pubmed/21160409
StudyCommon human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.
Disease/TraitHIV-1 susceptibility
Initial sample531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls
Replication sampleNA
Region9p24.1
Chromosome idchr9
Chromosome position7682601
Reported geneAL591509.5
Mapped genePPIAP33 - TMEM261
Upstream gene id392285
Downstream gene id90871
SNP gene ids
Upstream gene distance84227
Downstream gene distance113889
SNP risk allelers842304-?
SNPsrs842304
Merged0
SNP id current842304
Contextintergenic_variant
Intergenic1
Allele frequency0.42
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformIllumina [~ 800000]
CNVN
Mapped traitHIV-1 infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180
Study accessionGCST000918