Human SNP ID | rs842304 |
---|---|
Human chromosome | chr9 |
Human SNP position | 7682601 |
Pig chromosome | chr1 |
Pig SNP position | 239786703 |
PubMed ID | 21160409 |
---|---|
Journal | AIDS |
Link | www.ncbi.nlm.nih.gov/pubmed/21160409 |
Study | Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. |
Disease/Trait | HIV-1 susceptibility |
Initial sample | 531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls |
Replication sample | NA |
Region | 9p24.1 |
Chromosome id | chr9 |
Chromosome position | 7682601 |
Reported gene | AL591509.5 |
Mapped gene | PPIAP33 - TMEM261 |
Upstream gene id | 392285 |
Downstream gene id | 90871 |
SNP gene ids | |
Upstream gene distance | 84227 |
Downstream gene distance | 113889 |
SNP risk allele | rs842304-? |
SNPs | rs842304 |
Merged | 0 |
SNP id current | 842304 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.42 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [~ 800000] |
CNV | N |
Mapped trait | HIV-1 infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180 |
Study accession | GCST000918 |