SNP Detail For rs840016
1.Mapping Information
Human SNP ID rs840016
Human chromosome chr1
Human SNP position 167439433
Pig chromosome chr4
Pig SNP position 91253431
2.Annotation Information
PubMed ID20453842
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20453842
StudyGenome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.
Disease/TraitRheumatoid arthritis
Initial sample5,539 European ancestry cases, 20,169 European ancestry controls
Replication sample6,768 European ancestry cases, 8,806 European ancestry controls
Region1q24.2
Chromosome idchr1
Chromosome position167439433
Reported geneCD247
Mapped geneCD247
Upstream gene id
Downstream gene id
SNP gene ids919
Upstream gene distance
Downstream gene distance
SNP risk allelers840016-C
SNPsrs840016
Merged0
SNP id current840016
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.58
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.11
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2716259] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST000679