Human SNP ID | rs840016 |
---|---|
Human chromosome | chr1 |
Human SNP position | 167439433 |
Pig chromosome | chr4 |
Pig SNP position | 91253431 |
PubMed ID | 20453842 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20453842 |
Study | Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 5,539 European ancestry cases, 20,169 European ancestry controls |
Replication sample | 6,768 European ancestry cases, 8,806 European ancestry controls |
Region | 1q24.2 |
Chromosome id | chr1 |
Chromosome position | 167439433 |
Reported gene | CD247 |
Mapped gene | CD247 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 919 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs840016-C |
SNPs | rs840016 |
Merged | 0 |
SNP id current | 840016 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.58 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.11 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2716259] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST000679 |