Human SNP ID | rs837841 |
---|---|
Human chromosome | chr2 |
Human SNP position | 129276439 |
Pig chromosome | chr15 |
Pig SNP position | 64390210 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel) |
Initial sample | 147 Japanese ancestry cases, 233 Japanese ancestry controls |
Replication sample | NA |
Region | 2q21.1 |
Chromosome id | chr2 |
Chromosome position | 129276439 |
Reported gene | LOC151121 |
Mapped gene | LOC105373612 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105373612 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs837841-T |
SNPs | rs837841 |
Merged | 0 |
SNP id current | 837841 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.662 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (Recessive model) |
Or beta | 1.279 |
%95 Ci | [0.930-1.759] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to docetaxel, response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_1902519, http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST001995 |