Human SNP ID | rs823118 |
---|---|
Human chromosome | chr1 |
Human SNP position | 205754444 |
Pig chromosome | chr9 |
Pig SNP position | 72705309 |
PubMed ID | 25064009 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25064009 |
Study | Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson__s disease. |
Disease/Trait | Parkinson__s disease |
Initial sample | 13,708 European ancestry cases, 95,282 European ancestry controls |
Replication sample | 5,353 European ancestry cases, 5,551 European ancestry controls |
Region | 1q32.1 |
Chromosome id | chr1 |
Chromosome position | 205754444 |
Reported gene | NUCKS1, RAB7L1 |
Mapped gene | NUCKS1 - RAB29 |
Upstream gene id | 64710 |
Downstream gene id | 8934 |
SNP gene ids | |
Upstream gene distance | 4200 |
Downstream gene distance | 13542 |
SNP risk allele | rs823118-T |
SNPs | rs823118 |
Merged | 0 |
SNP id current | 823118 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.559 |
P value | 0.0000000000000002 |
Pvalue mlog | 15.698970004336 |
P value text | |
Or beta | 1.122 |
%95 Ci | [1.09-1.15] |
Platform | Illumina [7893274] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST002544 |