SNP Detail For rs823114
1.Mapping Information
Human SNP ID rs823114
Human chromosome chr1
Human SNP position 205750404
Pig chromosome chr9
Pig SNP position 72701718
2.Annotation Information
PubMed ID24842889
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24842889
StudyGenome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.
Disease/TraitParkinson__s disease
Initial sample1,130 Ashkenazi Jewish cases, 2,611 Ashkenazi Jewish controls
Replication sample306 Ashkenazi Jewish cases, 2,583 Ashkenazi Jewish controls
Region1q32.1
Chromosome idchr1
Chromosome position205750404
Reported genePARK16
Mapped geneNUCKS1 - RAB29
Upstream gene id64710
Downstream gene id8934
SNP gene ids
Upstream gene distance160
Downstream gene distance17582
SNP risk allelers823114-?
SNPsrs823114
Merged0
SNP id current823114
Contextupstream_gene_variant
Intergenic1
Allele frequency0.59
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.33
%95 Ci[1.20-1.47]
PlatformAffymetrix, Illumina [1069161] (imputed)
CNVN
Mapped traitParkinson__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002508
Study accessionGCST002455