Human SNP ID | rs823114 |
---|---|
Human chromosome | chr1 |
Human SNP position | 205750404 |
Pig chromosome | chr9 |
Pig SNP position | 72701718 |
PubMed ID | 24842889 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24842889 |
Study | Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes. |
Disease/Trait | Parkinson__s disease |
Initial sample | 1,130 Ashkenazi Jewish cases, 2,611 Ashkenazi Jewish controls |
Replication sample | 306 Ashkenazi Jewish cases, 2,583 Ashkenazi Jewish controls |
Region | 1q32.1 |
Chromosome id | chr1 |
Chromosome position | 205750404 |
Reported gene | PARK16 |
Mapped gene | NUCKS1 - RAB29 |
Upstream gene id | 64710 |
Downstream gene id | 8934 |
SNP gene ids | |
Upstream gene distance | 160 |
Downstream gene distance | 17582 |
SNP risk allele | rs823114-? |
SNPs | rs823114 |
Merged | 0 |
SNP id current | 823114 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.59 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.33 |
%95 Ci | [1.20-1.47] |
Platform | Affymetrix, Illumina [1069161] (imputed) |
CNV | N |
Mapped trait | Parkinson__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002508 |
Study accession | GCST002455 |