SNP Detail For rs8180040
1.Mapping Information
Human SNP ID rs8180040
Human chromosome chr3
Human SNP position 47347457
Pig chromosome chr13
Pig SNP position 33374881
2.Annotation Information
PubMed ID23350875
JournalBMC Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/23350875
StudyA colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.
Disease/TraitColorectal cancer
Initial sample882 European ancestry cases, 473 European ancestry controls
Replication sample1,436 European ancestry cases, 1,780 European ancestry controls
Region3p21.31
Chromosome idchr3
Chromosome position47347457
Reported geneNR
Mapped geneKLHL18 - PTPN23
Upstream gene id23276
Downstream gene id25930
SNP gene ids
Upstream gene distance641
Downstream gene distance33525
SNP risk allelers8180040-?
SNPsrs8180040
Merged0
SNP id current8180040
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.28
%95 Ci[1.15-1.41]
PlatformAffymetrix [674718]
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001832