Human SNP ID | rs8180040 |
---|---|
Human chromosome | chr3 |
Human SNP position | 47347457 |
Pig chromosome | chr13 |
Pig SNP position | 33374881 |
PubMed ID | 23350875 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/23350875 |
Study | A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12. |
Disease/Trait | Colorectal cancer |
Initial sample | 882 European ancestry cases, 473 European ancestry controls |
Replication sample | 1,436 European ancestry cases, 1,780 European ancestry controls |
Region | 3p21.31 |
Chromosome id | chr3 |
Chromosome position | 47347457 |
Reported gene | NR |
Mapped gene | KLHL18 - PTPN23 |
Upstream gene id | 23276 |
Downstream gene id | 25930 |
SNP gene ids | |
Upstream gene distance | 641 |
Downstream gene distance | 33525 |
SNP risk allele | rs8180040-? |
SNPs | rs8180040 |
Merged | 0 |
SNP id current | 8180040 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.28 |
%95 Ci | [1.15-1.41] |
Platform | Affymetrix [674718] |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST001832 |