SNP Detail For rs8179646
1.Mapping Information
Human SNP ID rs8179646
Human chromosome chr2
Human SNP position 156742166
Pig chromosome chr15
Pig SNP position 71081688
2.Annotation Information
PubMed ID25082827
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25082827
StudyA genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.
Disease/TraitUlcerative colitis
Initial sampleup to 7,483 European ancestry cases, up to 21,211 European ancestry controls
Replication sample1,073 European ancestry cases, 1,279 European ancestry controls
Region2q24.1
Chromosome idchr2
Chromosome position156742166
Reported geneGPD2
Mapped geneLOC105373708 - LOC105373710
Upstream gene id105373708
Downstream gene id105373710
SNP gene ids
Upstream gene distance47553
Downstream gene distance226248
SNP risk allelers8179646-T
SNPsrs8179646
Merged0
SNP id current8179646
Contextintergenic_variant
Intergenic1
Allele frequency0.38
P value0.000006
Pvalue mlog5.22184874961635
P value text(Southern European)
Or beta1.17
%95 Ci[1.03-1.34]
PlatformIllumina [546271]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST002548