Human SNP ID | rs8179646 |
---|---|
Human chromosome | chr2 |
Human SNP position | 156742166 |
Pig chromosome | chr15 |
Pig SNP position | 71081688 |
PubMed ID | 25082827 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25082827 |
Study | A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis. |
Disease/Trait | Ulcerative colitis |
Initial sample | up to 7,483 European ancestry cases, up to 21,211 European ancestry controls |
Replication sample | 1,073 European ancestry cases, 1,279 European ancestry controls |
Region | 2q24.1 |
Chromosome id | chr2 |
Chromosome position | 156742166 |
Reported gene | GPD2 |
Mapped gene | LOC105373708 - LOC105373710 |
Upstream gene id | 105373708 |
Downstream gene id | 105373710 |
SNP gene ids | |
Upstream gene distance | 47553 |
Downstream gene distance | 226248 |
SNP risk allele | rs8179646-T |
SNPs | rs8179646 |
Merged | 0 |
SNP id current | 8179646 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.38 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Southern European) |
Or beta | 1.17 |
%95 Ci | [1.03-1.34] |
Platform | Illumina [546271] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST002548 |