Human SNP ID | rs817826 |
---|---|
Human chromosome | chr9 |
Human SNP position | 107394019 |
Pig chromosome | chr1 |
Pig SNP position | 278989797 |
PubMed ID | 23023329 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23023329 |
Study | Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4. |
Disease/Trait | Prostate cancer |
Initial sample | 1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls |
Replication sample | 3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls |
Region | 9q31.2 |
Chromosome id | chr9 |
Chromosome position | 107394019 |
Reported gene | KLF4, RAD23B |
Mapped gene | RAD23B - LINC01509 |
Upstream gene id | 5887 |
Downstream gene id | 101928720 |
SNP gene ids | |
Upstream gene distance | 61825 |
Downstream gene distance | 26265 |
SNP risk allele | rs817826-C |
SNPs | rs817826 |
Merged | 0 |
SNP id current | 817826 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.084 |
P value | 0.00000000000005 |
Pvalue mlog | 13.3010299956639 |
P value text | |
Or beta | 1.41 |
%95 Ci | [1.29-1.54] |
Platform | Illumina [587294] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001702 |