SNP Detail For rs817826
1.Mapping Information
Human SNP ID rs817826
Human chromosome chr9
Human SNP position 107394019
Pig chromosome chr1
Pig SNP position 278989797
2.Annotation Information
PubMed ID23023329
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23023329
StudyGenome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.
Disease/TraitProstate cancer
Initial sample1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls
Replication sample3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls
Region9q31.2
Chromosome idchr9
Chromosome position107394019
Reported geneKLF4, RAD23B
Mapped geneRAD23B - LINC01509
Upstream gene id5887
Downstream gene id101928720
SNP gene ids
Upstream gene distance61825
Downstream gene distance26265
SNP risk allelers817826-C
SNPsrs817826
Merged0
SNP id current817826
Contextintergenic_variant
Intergenic1
Allele frequency0.084
P value0.00000000000005
Pvalue mlog13.3010299956639
P value text
Or beta1.41
%95 Ci[1.29-1.54]
PlatformIllumina [587294]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001702