Human SNP ID | rs8176749 |
---|---|
Human chromosome | chr9 |
Human SNP position | 133255801 |
Pig chromosome | chr6 |
Pig SNP position | 39924756 |
PubMed ID | 24586186 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24586186 |
Study | Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links. |
Disease/Trait | Urinary metabolites (H-NMR features) |
Initial sample | 835 European ancestry individuals |
Replication sample | 601 Brazilian individuals |
Region | 9q34.2 |
Chromosome id | chr9 |
Chromosome position | 133255801 |
Reported gene | ABO |
Mapped gene | ABO |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 28 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8176749-C |
SNPs | rs8176749 |
Merged | 0 |
SNP id current | 8176749 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.07 |
P value | 0.000000000004 |
Pvalue mlog | 11.397940008672 |
P value text | (5.2625, Unknown) |
Or beta | 0.48 |
%95 Ci | [NR] unit increase |
Platform | Illumina [713870] (imputed) |
CNV | N |
Mapped trait | urinary metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005116 |
Study accession | GCST002364 |
PubMed ID | 23300138 |
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/23300138 |
Study | A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and α fetoprotein and their associations with cancer risk. |
Disease/Trait | Tumor biomarkers |
Initial sample | 3,451 Han Chinese ancestry individuals |
Replication sample | 10,326 Chinese ancestry individuals |
Region | 9q34.2 |
Chromosome id | chr9 |
Chromosome position | 133255801 |
Reported gene | ABO |
Mapped gene | ABO |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 28 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8176749-T |
SNPs | rs8176749 |
Merged | 0 |
SNP id current | 8176749 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 7E-105 |
Pvalue mlog | 104.154901959985 |
P value text | (CEA) |
Or beta | 0.205 |
%95 Ci | [0.18-0.23] ng/ml increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | cancer biomarker measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005127 |
Study accession | GCST001808 |