Human SNP ID | rs8128234 |
---|---|
Human chromosome | chr21 |
Human SNP position | 35098568 |
Pig chromosome | chr13 |
Pig SNP position | 208405489 |
PubMed ID | 25903422 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 21q22.12 |
Chromosome id | chr21 |
Chromosome position | 35098568 |
Reported gene | RUNX1 |
Mapped gene | RUNX1 - LOC100506403 |
Upstream gene id | 861 |
Downstream gene id | 100506403 |
SNP gene ids | |
Upstream gene distance | 49258 |
Downstream gene distance | 273939 |
SNP risk allele | rs8128234-T |
SNPs | rs8128234 |
Merged | 0 |
SNP id current | 8128234 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.197 |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | |
Or beta | 1.13 |
%95 Ci | [1.08-1.18] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |
PubMed ID | 25903422 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 21q22.12 |
Chromosome id | chr21 |
Chromosome position | 35098568 |
Reported gene | RUNX1 |
Mapped gene | RUNX1 - LOC100506403 |
Upstream gene id | 861 |
Downstream gene id | 100506403 |
SNP gene ids | |
Upstream gene distance | 49258 |
Downstream gene distance | 273939 |
SNP risk allele | rs8128234-T |
SNPs | rs8128234 |
Merged | 0 |
SNP id current | 8128234 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.197 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | EA |
Or beta | 1.17 |
%95 Ci | [1.11-1.23] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |