SNP Detail For rs8127691
1.Mapping Information
Human SNP ID rs8127691
Human chromosome chr21
Human SNP position 44194977
Pig chromosome chr13
Pig SNP position 216970905
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region21q22.3
Chromosome idchr21
Chromosome position44194977
Reported geneNR
Mapped geneLOC105377139 - LOC105372832
Upstream gene id105377139
Downstream gene id105372832
SNP gene ids
Upstream gene distance343
Downstream gene distance6821
SNP risk allelers8127691-?
SNPsrs8127691
Merged
SNP id current8127691
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value9E-30
Pvalue mlog29.0457574905606
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043