Human SNP ID | rs8112449 |
---|---|
Human chromosome | chr19 |
Human SNP position | 10409388 |
Pig chromosome | chr2 |
Pig SNP position | 69529555 |
PubMed ID | 21833088 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21833088 |
Study | Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. |
Disease/Trait | Multiple sclerosis |
Initial sample | 9,772 European ancestry cases, 16,849 European ancestry controls |
Replication sample | 4,218 European ancestry cases, 7,296 European ancestry controls |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 10409388 |
Reported gene | CDC37, TYK2 |
Mapped gene | CDC37 - PDE4A |
Upstream gene id | 11140 |
Downstream gene id | 5141 |
SNP gene ids | |
Upstream gene distance | 5793 |
Downstream gene distance | 7385 |
SNP risk allele | rs8112449-G |
SNPs | rs8112449 |
Merged | 0 |
SNP id current | 8112449 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.07-1.1] |
Platform | Illumina [465434] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST001198 |
PubMed ID | 25317112 |
Journal | Genomics Inform |
Link | www.ncbi.nlm.nih.gov/pubmed/25317112 |
Study | Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations. |
Disease/Trait | Gastritis |
Initial sample | 977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 10409388 |
Reported gene | intergenic |
Mapped gene | CDC37 - PDE4A |
Upstream gene id | 11140 |
Downstream gene id | 5141 |
SNP gene ids | |
Upstream gene distance | 5793 |
Downstream gene distance | 7385 |
SNP risk allele | rs8112449-T |
SNPs | rs8112449 |
Merged | 0 |
SNP id current | 8112449 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Males) |
Or beta | 1.304 |
%95 Ci | [NR] |
Platform | NR [349184] |
CNV | N |
Mapped trait | gastritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000217 |
Study accession | GCST002638 |