Human SNP ID | rs8102137 |
---|---|
Human chromosome | chr19 |
Human SNP position | 29805946 |
Pig chromosome | chr6 |
Pig SNP position | 35324447 |
PubMed ID | 20972438 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20972438 |
Study | A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci. |
Disease/Trait | Bladder cancer |
Initial sample | 3,532 European ancestry cases, 5,120 European ancestry controls |
Replication sample | 8,381 cases, 48,275 controls |
Region | 19q12 |
Chromosome id | chr19 |
Chromosome position | 29805946 |
Reported gene | CCNE1 |
Mapped gene | C19orf12 - CCNE1 |
Upstream gene id | 83636 |
Downstream gene id | 898 |
SNP gene ids | |
Upstream gene distance | 90157 |
Downstream gene distance | 5952 |
SNP risk allele | rs8102137-C |
SNPs | rs8102137 |
Merged | 0 |
SNP id current | 8102137 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.33 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 1.13 |
%95 Ci | [1.09-1.17] |
Platform | Illumina [589299] |
CNV | N |
Mapped trait | bladder carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000292 |
Study accession | GCST000842 |
PubMed ID | 24163127 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24163127 |
Study | Genome-wide association study identifies multiple loci associated with bladder cancer risk. |
Disease/Trait | Bladder cancer |
Initial sample | up to 2,305 European ancestry cases, up to 3,901 European ancestry controls |
Replication sample | up to 13,298 cases, up to 54,535 controls |
Region | 19q12 |
Chromosome id | chr19 |
Chromosome position | 29805946 |
Reported gene | CCNE1 |
Mapped gene | C19orf12 - CCNE1 |
Upstream gene id | 83636 |
Downstream gene id | 898 |
SNP gene ids | |
Upstream gene distance | 90157 |
Downstream gene distance | 5952 |
SNP risk allele | rs8102137-C |
SNPs | rs8102137 |
Merged | 0 |
SNP id current | 8102137 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.33 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 1.13 |
%95 Ci | [1.09-1.17] |
Platform | Illumina [462190] |
CNV | N |
Mapped trait | bladder carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000292 |
Study accession | GCST002240 |