SNP Detail For rs8102137
1.Mapping Information
Human SNP ID rs8102137
Human chromosome chr19
Human SNP position 29805946
Pig chromosome chr6
Pig SNP position 35324447
2.Annotation Information
PubMed ID20972438
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20972438
StudyA multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.
Disease/TraitBladder cancer
Initial sample3,532 European ancestry cases, 5,120 European ancestry controls
Replication sample8,381 cases, 48,275 controls
Region19q12
Chromosome idchr19
Chromosome position29805946
Reported geneCCNE1
Mapped geneC19orf12 - CCNE1
Upstream gene id83636
Downstream gene id898
SNP gene ids
Upstream gene distance90157
Downstream gene distance5952
SNP risk allelers8102137-C
SNPsrs8102137
Merged0
SNP id current8102137
Contextregulatory_region_variant
Intergenic1
Allele frequency0.33
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.13
%95 Ci[1.09-1.17]
PlatformIllumina [589299]
CNVN
Mapped traitbladder carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000292
Study accessionGCST000842
PubMed ID24163127
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24163127
StudyGenome-wide association study identifies multiple loci associated with bladder cancer risk.
Disease/TraitBladder cancer
Initial sampleup to 2,305 European ancestry cases, up to 3,901 European ancestry controls
Replication sampleup to 13,298 cases, up to 54,535 controls
Region19q12
Chromosome idchr19
Chromosome position29805946
Reported geneCCNE1
Mapped geneC19orf12 - CCNE1
Upstream gene id83636
Downstream gene id898
SNP gene ids
Upstream gene distance90157
Downstream gene distance5952
SNP risk allelers8102137-C
SNPsrs8102137
Merged0
SNP id current8102137
Contextregulatory_region_variant
Intergenic1
Allele frequency0.33
P value0.00000000001
Pvalue mlog11
P value text
Or beta1.13
%95 Ci[1.09-1.17]
PlatformIllumina [462190]
CNVN
Mapped traitbladder carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000292
Study accessionGCST002240