Human SNP ID | rs807624 |
---|---|
Human chromosome | chr2 |
Human SNP position | 15642347 |
Pig chromosome | chr3 |
Pig SNP position | 130141607 |
PubMed ID | 22544364 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22544364 |
Study | A genome-wide association study identifies susceptibility loci for Wilms tumor. |
Disease/Trait | Wilms tumor |
Initial sample | 757 European ancestry cases, 1,879 European ancestry controls |
Replication sample | 1,488 European ancestry cases, 3,851 European ancestry controls |
Region | 2p24.3 |
Chromosome id | chr2 |
Chromosome position | 15642347 |
Reported gene | MYCN, DDX1 |
Mapped gene | DDX1 - LOC101926966 |
Upstream gene id | 1653 |
Downstream gene id | 101926966 |
SNP gene ids | |
Upstream gene distance | 11236 |
Downstream gene distance | 48435 |
SNP risk allele | rs807624-A |
SNPs | rs807624 |
Merged | 0 |
SNP id current | 807624 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.35 |
P value | 0.00000000000001 |
Pvalue mlog | 14 |
P value text | |
Or beta | 1.33 |
%95 Ci | [1.22-1.45] |
Platform | Illumina [599255] |
CNV | N |
Mapped trait | Nephroblastoma |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_654 |
Study accession | GCST001500 |