SNP Detail For rs8072451
1.Mapping Information
Human SNP ID rs8072451
Human chromosome chr17
Human SNP position 45816350
Pig chromosome chr12
Pig SNP position 17387664
2.Annotation Information
PubMed ID25607358
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25607358
StudyCommon genetic variants influence human subcortical brain structures.
Disease/TraitSubcortical brain region volumes
Initial sampleup to 13,171 European ancestry individuals
Replication sampleup to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals
Region17q21.31
Chromosome idchr17
Chromosome position45816350
Reported geneMAPT, GRN, CRHR1, STH
Mapped geneMGC57346-CRHR1, CRHR1
Upstream gene id
Downstream gene id
SNP gene ids104909134, 1394
Upstream gene distance
Downstream gene distance
SNP risk allelers8072451-?
SNPsrs8072451
Merged0
SNP id current8072451
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text(Intracranial volume, EA)
Or beta14489.99
%95 Ci[9539.28-19440.70] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitintra cranial volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004886
Study accessionGCST002756