SNP Detail For rs807029
1.Mapping Information
Human SNP ID rs807029
Human chromosome chr10
Human SNP position 101004290
Pig chromosome chr14
Pig SNP position 121738879
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitEjection fraction in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region10q24.31
Chromosome idchr10
Chromosome position101004290
Reported geneLZTS2
Mapped geneLZTS2
Upstream gene id
Downstream gene id
SNP gene ids84445
Upstream gene distance
Downstream gene distance
SNP risk allelers807029-?
SNPsrs807029
Merged0
SNP id current807029
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitTrypanosoma cruzi seropositivity, ejection fraction measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005530, http://www.ebi.ac.uk/efo/EFO_0005527
Study accessionGCST002281