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SNP Detail For rs8067912
1.Mapping Information
| Human SNP ID | rs8067912 |
|---|---|
| Human chromosome | chr17 |
| Human SNP position | 58236543 |
| Pig chromosome | chr12 |
| Pig SNP position | 36288016 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 17q22 |
| Chromosome id | chr17 |
| Chromosome position | 58236543 |
| Reported gene | NR |
| Mapped gene | LOC105371841 - LPO |
| Upstream gene id | 105371841 |
| Downstream gene id | 4025 |
| SNP gene ids | |
| Upstream gene distance | 2990 |
| Downstream gene distance | 1194 |
| SNP risk allele | rs8067912-C |
| SNPs | rs8067912 |
| Merged | 0 |
| SNP id current | 8067912 |
| Context | intron_variant |
| Intergenic | 1 |
| Allele frequency | 0.0307230178539626 |
| P value | 0.0000005 |
| Pvalue mlog | 6.30102999566398 |
| P value text | (IGP31) |
| Or beta | 0.4565 |
| %95 Ci | [0.28-0.63] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 17q22 |
| Chromosome id | chr17 |
| Chromosome position | 58236543 |
| Reported gene | NR |
| Mapped gene | LOC105371841 - LPO |
| Upstream gene id | 105371841 |
| Downstream gene id | 4025 |
| SNP gene ids | |
| Upstream gene distance | 2990 |
| Downstream gene distance | 1194 |
| SNP risk allele | rs8067912-C |
| SNPs | rs8067912 |
| Merged | 0 |
| SNP id current | 8067912 |
| Context | intron_variant |
| Intergenic | 1 |
| Allele frequency | 0.0305423055728934 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (IGP35) |
| Or beta | 0.4386 |
| %95 Ci | [0.26-0.62] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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