SNP Detail For rs8064454
1.Mapping Information
Human SNP ID rs8064454
Human chromosome chr17
Human SNP position 37741595
Pig chromosome chr12
Pig SNP position 40843247
2.Annotation Information
PubMed ID25939597
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25939597
StudyTwo susceptibility loci identified for prostate cancer aggressiveness.
Disease/TraitProstate cancer
Initial sample4,600 European ancestry cases, 2,941 European ancestry controls
Replication sample7,779 European ancestry cases, 7,623 European ancestry controls
Region17q12
Chromosome idchr17
Chromosome position37741595
Reported geneHNF1B
Mapped geneHNF1B
Upstream gene id
Downstream gene id
SNP gene ids6928
Upstream gene distance
Downstream gene distance
SNP risk allelers8064454-C
SNPsrs8064454
Merged0
SNP id current8064454
Contextintron_variant
Intergenic0
Allele frequency0.52
P value8E-29
Pvalue mlog28.096910013008
P value text
Or beta1.24
%95 Ci[1.19鈥?.29]
PlatformIllumina [1531807] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002890