Human SNP ID | rs8057551 |
---|---|
Human chromosome | chr16 |
Human SNP position | 27423606 |
Pig chromosome | chr3 |
Pig SNP position | 19705192 |
PubMed ID | 19874204 |
---|---|
Journal | J Bone Miner Res |
Link | www.ncbi.nlm.nih.gov/pubmed/19874204 |
Study | IL21R and PTH may underlie variation of femoral neck bone mineral density as revealed by a genome-wide association study. |
Disease/Trait | Bone mineral density |
Initial sample | 983 European ancestry individuals |
Replication sample | 2,557 European ancestry individuals from 750 families |
Region | 16p12.1 |
Chromosome id | chr16 |
Chromosome position | 27423606 |
Reported gene | IL21R |
Mapped gene | IL21R |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 50615 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8057551-G |
SNPs | rs8057551 |
Merged | 0 |
SNP id current | 8057551 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.11 |
%95 Ci | [NR] s.d. increase |
Platform | Affymetrix [342854] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000515 |