SNP Detail For rs805297
1.Mapping Information
Human SNP ID rs805297
Human chromosome chr6
Human SNP position 31654829
Pig chromosome chr7
Pig SNP position 27481946
2.Annotation Information
PubMed ID21844665
JournalExp Mol Med
Linkwww.ncbi.nlm.nih.gov/pubmed/21844665
StudyCommon variants at the promoter region of the APOM confer a risk of rheumatoid arthritis.
Disease/TraitRheumatoid arthritis
Initial sample100 Korean ancestry cases, 600 Korean ancestry controls
Replication sample578 Korean ancestry cases, 711 Korean ancestry controls
Region6p21.33
Chromosome idchr6
Chromosome position31654829
Reported geneAPOM
Mapped geneBAG6, APOM
Upstream gene id
Downstream gene id
SNP gene ids7917, 55937
Upstream gene distance
Downstream gene distance
SNP risk allelers805297-A
SNPsrs805297
Merged0
SNP id current805297
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta1.56
%95 Ci[1.36-1.80]
PlatformAffymetrix [300909]
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST001203