Human SNP ID | rs805297 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31654829 |
Pig chromosome | chr7 |
Pig SNP position | 27481946 |
PubMed ID | 21844665 |
---|---|
Journal | Exp Mol Med |
Link | www.ncbi.nlm.nih.gov/pubmed/21844665 |
Study | Common variants at the promoter region of the APOM confer a risk of rheumatoid arthritis. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 100 Korean ancestry cases, 600 Korean ancestry controls |
Replication sample | 578 Korean ancestry cases, 711 Korean ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31654829 |
Reported gene | APOM |
Mapped gene | BAG6, APOM |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7917, 55937 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs805297-A |
SNPs | rs805297 |
Merged | 0 |
SNP id current | 805297 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.56 |
%95 Ci | [1.36-1.80] |
Platform | Affymetrix [300909] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST001203 |