SNP Detail For rs804292
1.Mapping Information
Human SNP ID rs804292
Human chromosome chr8
Human SNP position 11786406
Pig chromosome chr14
Pig SNP position 16154130
2.Annotation Information
PubMed ID23942779
JournalBehav Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23942779
StudyA genome-wide association study of behavioral disinhibition.
Disease/TraitNicotine use
Initial sample7,188 European ancestry individuals
Replication sampleNA
Region8p23.1
Chromosome idchr8
Chromosome position11786406
Reported geneNEIL2
Mapped geneNEIL2
Upstream gene id
Downstream gene id
SNP gene ids252969
Upstream gene distance
Downstream gene distance
SNP risk allelers804292-G
SNPsrs804292
Merged0
SNP id current804292
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.234
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta6.529
%95 Ci[NR] unit decrease
PlatformIllumina [527829]
CNVN
Mapped traitnicotine use
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005430
Study accessionGCST002135
PubMed ID23942779
JournalBehav Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23942779
StudyA genome-wide association study of behavioral disinhibition.
Disease/TraitAlcohol dependence
Initial sample7,188 European ancestry individuals
Replication sampleNA
Region8p23.1
Chromosome idchr8
Chromosome position11786406
Reported geneNEIL2
Mapped geneNEIL2
Upstream gene id
Downstream gene id
SNP gene ids252969
Upstream gene distance
Downstream gene distance
SNP risk allelers804292-G
SNPsrs804292
Merged0
SNP id current804292
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.234
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.414
%95 Ci[NR] unit decrease
PlatformIllumina [527829]
CNVN
Mapped traitalcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST002134