SNP Detail For rs80337801
1.Mapping Information
Human SNP ID rs80337801
Human chromosome chr5
Human SNP position 74359173
Pig chromosome chr2
Pig SNP position 85119586
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q13.3
Chromosome idchr5
Chromosome position74359173
Reported geneNR
Mapped geneLINC01333 - LINC01331
Upstream gene id101929082
Downstream gene id104310351
SNP gene ids
Upstream gene distance30816
Downstream gene distance10203
SNP risk allelers80337801-?
SNPsrs80337801
Merged
SNP id current80337801
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Native Hawaiian)
Or beta0.9711
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957