SNP Detail For rs8033165
1.Mapping Information
Human SNP ID rs8033165
Human chromosome chr15
Human SNP position 28760947
Pig chromosome chr11
Pig SNP position 67299952
2.Annotation Information
PubMed ID18483556
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18483556
StudyA genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.
Disease/TraitBlack vs. blond hair color
Initial sample2,287 European ancestry female individuals
Replication sample8,465 European ancestry individuals
Region15q13.1
Chromosome idchr15
Chromosome position28760947
Reported geneintergenic
Mapped geneWHAMMP2 - LOC100289656
Upstream gene id440253
Downstream gene id100289656
SNP gene ids
Upstream gene distance2585
Downstream gene distance27296
SNP risk allelers8033165-T
SNPsrs8033165
Merged0
SNP id current8033165
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.00000000005
Pvalue mlog10.3010299956639
P value text
Or beta0.12
%95 Ci[0.08-0.16] hair color score increase
PlatformIllumina [528173]
CNVN
Mapped traithair color
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003924
Study accessionGCST000190
PubMed ID18483556
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18483556
StudyA genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.
Disease/TraitBlack vs. red hair color
Initial sample2,287 European ancestry female individuals
Replication sample8,465 European ancestry individuals
Region15q13.1
Chromosome idchr15
Chromosome position28760947
Reported geneintergenic
Mapped geneWHAMMP2 - LOC100289656
Upstream gene id440253
Downstream gene id100289656
SNP gene ids
Upstream gene distance2585
Downstream gene distance27296
SNP risk allelers8033165-T
SNPsrs8033165
Merged0
SNP id current8033165
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta0.15
%95 Ci[0.11-0.19] hair color score increase
PlatformIllumina [528173]
CNVN
Mapped traithair color
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003924
Study accessionGCST000191