Human SNP ID | rs8033165 |
---|---|
Human chromosome | chr15 |
Human SNP position | 28760947 |
Pig chromosome | chr11 |
Pig SNP position | 67299952 |
PubMed ID | 18483556 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18483556 |
Study | A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation. |
Disease/Trait | Black vs. blond hair color |
Initial sample | 2,287 European ancestry female individuals |
Replication sample | 8,465 European ancestry individuals |
Region | 15q13.1 |
Chromosome id | chr15 |
Chromosome position | 28760947 |
Reported gene | intergenic |
Mapped gene | WHAMMP2 - LOC100289656 |
Upstream gene id | 440253 |
Downstream gene id | 100289656 |
SNP gene ids | |
Upstream gene distance | 2585 |
Downstream gene distance | 27296 |
SNP risk allele | rs8033165-T |
SNPs | rs8033165 |
Merged | 0 |
SNP id current | 8033165 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000000005 |
Pvalue mlog | 10.3010299956639 |
P value text | |
Or beta | 0.12 |
%95 Ci | [0.08-0.16] hair color score increase |
Platform | Illumina [528173] |
CNV | N |
Mapped trait | hair color |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003924 |
Study accession | GCST000190 |
PubMed ID | 18483556 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18483556 |
Study | A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation. |
Disease/Trait | Black vs. red hair color |
Initial sample | 2,287 European ancestry female individuals |
Replication sample | 8,465 European ancestry individuals |
Region | 15q13.1 |
Chromosome id | chr15 |
Chromosome position | 28760947 |
Reported gene | intergenic |
Mapped gene | WHAMMP2 - LOC100289656 |
Upstream gene id | 440253 |
Downstream gene id | 100289656 |
SNP gene ids | |
Upstream gene distance | 2585 |
Downstream gene distance | 27296 |
SNP risk allele | rs8033165-T |
SNPs | rs8033165 |
Merged | 0 |
SNP id current | 8033165 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 0.15 |
%95 Ci | [0.11-0.19] hair color score increase |
Platform | Illumina [528173] |
CNV | N |
Mapped trait | hair color |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003924 |
Study accession | GCST000191 |