SNP Detail For rs80311637
1.Mapping Information
Human SNP ID rs80311637
Human chromosome chr3
Human SNP position 64550972
Pig chromosome chr13
Pig SNP position 50546518
2.Annotation Information
PubMed ID24124411
JournalGenomics Inform
Linkwww.ncbi.nlm.nih.gov/pubmed/24124411
StudyGenome-wide association study of liver enzymes in korean children.
Disease/TraitLiver enzyme levels (alanine transaminase)
Initial sample484 Korean ancestry children
Replication sampleNA
Region3p14.1
Chromosome idchr3
Chromosome position64550972
Reported geneADAMTS9
Mapped geneADAMTS9
Upstream gene id
Downstream gene id
SNP gene ids56999
Upstream gene distance
Downstream gene distance
SNP risk allelers80311637-A
SNPsrs80311637
Merged0
SNP id current80311637
Contextmissense_variant
Intergenic0
Allele frequency0.029
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.137
%95 Ci[0.078-0.196] unit increase
PlatformIllumina [747076]
CNVN
Mapped traitserum alanine aminotransferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004735
Study accessionGCST002207
PubMed ID24124411
JournalGenomics Inform
Linkwww.ncbi.nlm.nih.gov/pubmed/24124411
StudyGenome-wide association study of liver enzymes in korean children.
Disease/TraitLiver enzyme levels (aspartate transaminase)
Initial sample484 Korean ancestry children
Replication sampleNA
Region3p14.1
Chromosome idchr3
Chromosome position64550972
Reported geneADAMTS9
Mapped geneADAMTS9
Upstream gene id
Downstream gene id
SNP gene ids56999
Upstream gene distance
Downstream gene distance
SNP risk allelers80311637-A
SNPsrs80311637
Merged0
SNP id current80311637
Contextmissense_variant
Intergenic0
Allele frequency0.029
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.078
%95 Ci[0.047-0.109] unit increase
PlatformIllumina [747076]
CNVN
Mapped traitaspartate aminotransferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004736
Study accessionGCST002208