Human SNP ID | rs802734 |
---|---|
Human chromosome | chr6 |
Human SNP position | 127957653 |
Pig chromosome | chr1 |
Pig SNP position | 38988378 |
PubMed ID | 20190752 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20190752 |
Study | Multiple common variants for celiac disease influencing immune gene expression. |
Disease/Trait | Celiac disease |
Initial sample | 4,533 European ancestry cases, 10,750 European ancestry controls |
Replication sample | 4,918 European ancestry cases, 5,684 European ancestry controls |
Region | 6q22.33 |
Chromosome id | chr6 |
Chromosome position | 127957653 |
Reported gene | THEMIS, PTPRK |
Mapped gene | THEMIS - PTPRK |
Upstream gene id | 387357 |
Downstream gene id | 5796 |
SNP gene ids | |
Upstream gene distance | 39022 |
Downstream gene distance | 11126 |
SNP risk allele | rs802734-G |
SNPs | rs802734 |
Merged | 0 |
SNP id current | 802734 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.31 |
P value | 0.00000000000003 |
Pvalue mlog | 13.5228787452803 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.12-1.22] |
Platform | Illumina [292387] |
CNV | N |
Mapped trait | celiac disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001060 |
Study accession | GCST000612 |
PubMed ID | 21833088 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21833088 |
Study | Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. |
Disease/Trait | Multiple sclerosis |
Initial sample | 9,772 European ancestry cases, 16,849 European ancestry controls |
Replication sample | 4,218 European ancestry cases, 7,296 European ancestry controls |
Region | 6q22.33 |
Chromosome id | chr6 |
Chromosome position | 127957653 |
Reported gene | THEMIS, PTPRK |
Mapped gene | THEMIS - PTPRK |
Upstream gene id | 387357 |
Downstream gene id | 5796 |
SNP gene ids | |
Upstream gene distance | 39022 |
Downstream gene distance | 11126 |
SNP risk allele | rs802734-A |
SNPs | rs802734 |
Merged | 0 |
SNP id current | 802734 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.09-1.12] |
Platform | Illumina [465434] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST001198 |