SNP Detail For rs80261602
1.Mapping Information
Human SNP ID rs80261602
Human chromosome chr7
Human SNP position 122631261
Pig chromosome chr18
Pig SNP position 26161852
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region7q31.32
Chromosome idchr7
Chromosome position122631261
Reported geneNR
Mapped geneCADPS2
Upstream gene id
Downstream gene id
SNP gene ids93664
Upstream gene distance
Downstream gene distance
SNP risk allelers80261602-?
SNPsrs80261602
Merged
SNP id current80261602
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.3507
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956