Human SNP ID | rs8022296 |
---|---|
Human chromosome | chr14 |
Human SNP position | 97521520 |
Pig chromosome | chr7 |
Pig SNP position | 125886437 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs) |
Initial sample | 371 Japanese ancestry cases, 825 Japanese ancestry controls |
Replication sample | NA |
Region | 14q32.2 |
Chromosome id | chr14 |
Chromosome position | 97521520 |
Reported gene | LOC100129345 |
Mapped gene | LOC101929241 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101929241 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8022296-G |
SNPs | rs8022296 |
Merged | 0 |
SNP id current | 8022296 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.608 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (Recessive model) |
Or beta | 1.269 |
%95 Ci | [1.058-1.521] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to antineoplastic agent, response to antimicrotubule agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327, http://www.ebi.ac.uk/efo/EFO_0005260 |
Study accession | GCST002001 |