Human SNP ID | rs8014907 |
---|---|
Human chromosome | chr14 |
Human SNP position | 92333660 |
Pig chromosome | chr7 |
Pig SNP position | 120449001 |
PubMed ID | 26184321 |
---|---|
Journal | Genes |
Link | www.ncbi.nlm.nih.gov/pubmed/26184321 |
Study | Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample. |
Disease/Trait | Blond vs non-blond hair color |
Initial sample | 2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals |
Replication sample | NA |
Region | 14q32.12 |
Chromosome id | chr14 |
Chromosome position | 92333660 |
Reported gene | SLC24A4 |
Mapped gene | SLC24A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 123041 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8014907-? |
SNPs | rs8014907 |
Merged | |
SNP id current | 8014907 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.178 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.4317 |
%95 Ci | [1.32-1.54] |
Platform | Affymetrix, Illumina, Perlegen [6473680] (imputed) |
CNV | N |
Mapped trait | hair color |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003924 |
Study accession | GCST003023 |
PubMed ID | 26184321 |
Journal | Genes |
Link | www.ncbi.nlm.nih.gov/pubmed/26184321 |
Study | Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample. |
Disease/Trait | Brown vs. non-brown hair color |
Initial sample | 3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals |
Replication sample | NA |
Region | 14q32.12 |
Chromosome id | chr14 |
Chromosome position | 92333660 |
Reported gene | SLC24A4 |
Mapped gene | SLC24A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 123041 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8014907-? |
SNPs | rs8014907 |
Merged | |
SNP id current | 8014907 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.822 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.3770311 |
%95 Ci | [1.27-1.48] |
Platform | Affymetrix, Illumina, Perlegen [6473680] (imputed) |
CNV | N |
Mapped trait | hair color |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003924 |
Study accession | GCST003021 |
PubMed ID | 26184321 |
Journal | Genes |
Link | www.ncbi.nlm.nih.gov/pubmed/26184321 |
Study | Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample. |
Disease/Trait | Light vs. dark hair color |
Initial sample | 3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals |
Replication sample | NA |
Region | 14q32.12 |
Chromosome id | chr14 |
Chromosome position | 92333660 |
Reported gene | SLC24A4 |
Mapped gene | SLC24A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 123041 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs8014907-? |
SNPs | rs8014907 |
Merged | |
SNP id current | 8014907 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.822 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.4228799 |
%95 Ci | [1.32-1.53] |
Platform | Affymetrix, Illumina, Perlegen [6473680] (imputed) |
CNV | N |
Mapped trait | hair color |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003924 |
Study accession | GCST003022 |