SNP Detail For rs80127210
1.Mapping Information
Human SNP ID rs80127210
Human chromosome chr4
Human SNP position 36440352
Pig chromosome chr8
Pig SNP position 29517632
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region4p14
Chromosome idchr4
Chromosome position36440352
Reported geneNR
Mapped geneMIR1255B1 - LOC105374400
Upstream gene id100313806
Downstream gene id105374400
SNP gene ids
Upstream gene distance13924
Downstream gene distance55844
SNP risk allelers80127210-?
SNPsrs80127210
Merged
SNP id current80127210
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(Native Hawaiian)
Or beta0.94
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956