Human SNP ID | rs800823 |
---|---|
Human chromosome | chr2 |
Human SNP position | 192355686 |
Pig chromosome | chr15 |
Pig SNP position | 108533277 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 2q32.3 |
Chromosome id | chr2 |
Chromosome position | 192355686 |
Reported gene | Intergenic |
Mapped gene | TMEFF2 - PCGEM1 |
Upstream gene id | 23671 |
Downstream gene id | 64002 |
SNP gene ids | |
Upstream gene distance | 160746 |
Downstream gene distance | 394159 |
SNP risk allele | rs800823-C |
SNPs | rs800823 |
Merged | 0 |
SNP id current | 800823 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.976 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (AA) |
Or beta | 0.113 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003265 |