Human SNP ID | rs8002779 |
---|---|
Human chromosome | chr13 |
Human SNP position | 91363723 |
Pig chromosome | chr11 |
Pig SNP position | 66623311 |
PubMed ID | 20189936 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20189936 |
Study | A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. |
Disease/Trait | Height |
Initial sample | 19,633 Japanese ancestry individuals |
Replication sample | NA |
Region | 13q31.3 |
Chromosome id | chr13 |
Chromosome position | 91363723 |
Reported gene | GPC5 |
Mapped gene | MIR17HG - GPC5 |
Upstream gene id | 407975 |
Downstream gene id | 2262 |
SNP gene ids | |
Upstream gene distance | 9148 |
Downstream gene distance | 34896 |
SNP risk allele | rs8002779-A |
SNPs | rs8002779 |
Merged | 0 |
SNP id current | 8002779 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.48 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.05 |
%95 Ci | [0.03-0.07] cm decrease |
Platform | Illumina [420885] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000611 |