SNP Detail For rs8002779
1.Mapping Information
Human SNP ID rs8002779
Human chromosome chr13
Human SNP position 91363723
Pig chromosome chr11
Pig SNP position 66623311
2.Annotation Information
PubMed ID20189936
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20189936
StudyA genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.
Disease/TraitHeight
Initial sample19,633 Japanese ancestry individuals
Replication sampleNA
Region13q31.3
Chromosome idchr13
Chromosome position91363723
Reported geneGPC5
Mapped geneMIR17HG - GPC5
Upstream gene id407975
Downstream gene id2262
SNP gene ids
Upstream gene distance9148
Downstream gene distance34896
SNP risk allelers8002779-A
SNPsrs8002779
Merged0
SNP id current8002779
Contextintergenic_variant
Intergenic1
Allele frequency0.48
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.05
%95 Ci[0.03-0.07] cm decrease
PlatformIllumina [420885]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000611