Human SNP ID | rs799979 |
---|---|
Human chromosome | chr7 |
Human SNP position | 80415882 |
Pig chromosome | chr9 |
Pig SNP position | 110361679 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 7q21.11 |
Chromosome id | chr7 |
Chromosome position | 80415882 |
Reported gene | GNAI1, GNAT3 |
Mapped gene | LOC101927269 - GNAT3 |
Upstream gene id | 101927269 |
Downstream gene id | 346562 |
SNP gene ids | |
Upstream gene distance | 41443 |
Downstream gene distance | 41410 |
SNP risk allele | rs799979-A |
SNPs | rs799979 |
Merged | |
SNP id current | 799979 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.02 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (EA) |
Or beta | 0.7513 |
%95 Ci | [0.49-1.01] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 7q21.11 |
Chromosome id | chr7 |
Chromosome position | 80415882 |
Reported gene | GNAI1, GNAT3 |
Mapped gene | LOC101927269 - GNAT3 |
Upstream gene id | 101927269 |
Downstream gene id | 346562 |
SNP gene ids | |
Upstream gene distance | 41443 |
Downstream gene distance | 41410 |
SNP risk allele | rs799979-A |
SNPs | rs799979 |
Merged | |
SNP id current | 799979 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.02 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.5781 |
%95 Ci | [0.35-0.81] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |