SNP Detail For rs799979
1.Mapping Information
Human SNP ID rs799979
Human chromosome chr7
Human SNP position 80415882
Pig chromosome chr9
Pig SNP position 110361679
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region7q21.11
Chromosome idchr7
Chromosome position80415882
Reported geneGNAI1, GNAT3
Mapped geneLOC101927269 - GNAT3
Upstream gene id101927269
Downstream gene id346562
SNP gene ids
Upstream gene distance41443
Downstream gene distance41410
SNP risk allelers799979-A
SNPsrs799979
Merged
SNP id current799979
Contextintron_variant
Intergenic1
Allele frequency0.02
P value0.00000003
Pvalue mlog7.52287874528033
P value text(EA)
Or beta0.7513
%95 Ci[0.49-1.01] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region7q21.11
Chromosome idchr7
Chromosome position80415882
Reported geneGNAI1, GNAT3
Mapped geneLOC101927269 - GNAT3
Upstream gene id101927269
Downstream gene id346562
SNP gene ids
Upstream gene distance41443
Downstream gene distance41410
SNP risk allelers799979-A
SNPsrs799979
Merged
SNP id current799979
Contextintron_variant
Intergenic1
Allele frequency0.02
P value0.000001
Pvalue mlog6
P value text
Or beta0.5781
%95 Ci[0.35-0.81] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075