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SNP Detail For rs7998314
1.Mapping Information
| Human SNP ID | rs7998314 |
|---|---|
| Human chromosome | chr13 |
| Human SNP position | 93580876 |
| Pig chromosome | chr11 |
| Pig SNP position | 68704460 |
2.Annotation Information
| PubMed ID | 23251661 |
|---|---|
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
| Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
| Disease/Trait | Obesity-related traits |
| Initial sample | 815 Hispanic children from 263 families |
| Replication sample | NA |
| Region | 13q31.3 |
| Chromosome id | chr13 |
| Chromosome position | 93580876 |
| Reported gene | GPC6 |
| Mapped gene | GPC6 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10082 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs7998314-A |
| SNPs | rs7998314 |
| Merged | 0 |
| SNP id current | 7998314 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.487 |
| P value | 0.0000007 |
| Pvalue mlog | 6.15490195998574 |
| P value text | (Energy storage ) |
| Or beta | 0.04 |
| %95 Ci | [NR] kcal/d increase |
| Platform | Illumina [899892] |
| CNV | N |
| Mapped trait | body composition measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005106 |
| Study accession | GCST001762 |
| PubMed ID | 23251661 |
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
| Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
| Disease/Trait | Obesity-related traits |
| Initial sample | 815 Hispanic children from 263 families |
| Replication sample | NA |
| Region | 13q31.3 |
| Chromosome id | chr13 |
| Chromosome position | 93580876 |
| Reported gene | GPC6 |
| Mapped gene | GPC6 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10082 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs7998314-A |
| SNPs | rs7998314 |
| Merged | 0 |
| SNP id current | 7998314 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.487 |
| P value | 0.0000004 |
| Pvalue mlog | 6.39794000867203 |
| P value text | (Fat mass change ) |
| Or beta | 0.04 |
| %95 Ci | [NR] kg/y increase |
| Platform | Illumina [899892] |
| CNV | N |
| Mapped trait | body composition measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005106 |
| Study accession | GCST001762 |
| PubMed ID | 23251661 |
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
| Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
| Disease/Trait | Obesity-related traits |
| Initial sample | 815 Hispanic children from 263 families |
| Replication sample | NA |
| Region | 13q31.3 |
| Chromosome id | chr13 |
| Chromosome position | 93580876 |
| Reported gene | GPC6 |
| Mapped gene | GPC6 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 10082 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs7998314-A |
| SNPs | rs7998314 |
| Merged | 0 |
| SNP id current | 7998314 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.487 |
| P value | 0.0000004 |
| Pvalue mlog | 6.39794000867203 |
| P value text | (Fat mass deposition ) |
| Or beta | 0.04 |
| %95 Ci | [NR] kcal/d increase |
| Platform | Illumina [899892] |
| CNV | N |
| Mapped trait | body composition measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005106 |
| Study accession | GCST001762 |
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