SNP Detail For rs7996217
1.Mapping Information
Human SNP ID rs7996217
Human chromosome chr13
Human SNP position 101348594
Pig chromosome chr11
Pig SNP position 77266284
2.Annotation Information
PubMed ID22628157
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22628157
StudyGenome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.
Disease/TraitHIV-associated dementia
Initial sample1,287 European ancestry HIV-infected male individuals
Replication sampleNA
Region13q33.1
Chromosome idchr13
Chromosome position101348594
Reported geneNALCN
Mapped geneNALCN
Upstream gene id
Downstream gene id
SNP gene ids259232
Upstream gene distance
Downstream gene distance
SNP risk allelers7996217-T
SNPsrs7996217
Merged0
SNP id current7996217
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text(SPEED)
Or beta
%95 Ci
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitAIDS dementia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002608
Study accessionGCST001542